Preview: ChemBioChem 10/2011

Written by ChemBioChem on June 14, 2011 – 5:00 am -


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Abyssomicin Biosynthesis: Formation of an Unusual Polyketide, Antibiotic-Feeding Studies and Genetic Analysis

Written by Elvira M. Gottardi on June 14, 2011 – 5:00 am -

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Small wonder:Atrop-abyssomicin C is a small, yet complex spirotetronate (see scheme) that is active against Gram-positive bacteria, such as MRSA. Feeding studies and genetic manipulation of its producer, Verrucosispora maris AB-18-032, for the first time give insight into its biosynthesis and demonstrate how closely related the members of this important class of molecules are.


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Spotlights on our sister journals: ChemBioChem 9/2011

Written by ChemBioChem on June 14, 2011 – 5:00 am -


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Corrigendum: Mechanism of Action of the Cytotoxic Macrolides Amphidinolide X and J

Written by Chiara Trigili on June 14, 2011 – 5:00 am -


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Corrigendum: Carbohydrate–Protein Interactions: A 3D View by NMR

Written by Virginia Roldós on June 14, 2011 – 5:00 am -


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Corrigendum: Caught in the Act: Visualization of SNARE-Mediated Fusion Events in Molecular Detail

Written by Herre Jelger Risselada on June 14, 2011 – 5:00 am -


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Graphical Abstract: ChemBioChem 9/2011

Written by ChemBioChem on June 14, 2011 – 5:00 am -


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Cover Picture: Dissecting the Role of Single Regions of an IAPP Mimic and IAPP in Inhibition of Aβ40 Amyloid Formation and Cytotoxicity (ChemBioChem 9/2011)

Written by Erika Andreetto on June 14, 2011 – 5:00 am -

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The cover picture shows the effects of individual regions of IAPP-GI, a nonamyloidogenic mimic of the type 2 diabetes islet amyloid polypeptide (IAPP), on amyloid formation of the Alzheimer's disease amyloid β-peptide (Aβ). IAPP-GI has previously been found to bind Aβ with high affinity and to block its cytotoxic amyloidogenesis. Moreover, the Aβ-IAPP cross-amyloid interaction suppresses cytotoxic self-association by both polypeptides and might be a molecular link between the two diseases. Here the 37-residue IAPP-GI was dissected into shorter segments including the two hot-spot regions of the Aβ-IAPP(IAPP-GI) interaction interface IAPP(8–18) (pink) and IAPP(22–28)-GI (green) and the N- or C-terminal regions IAPP(1–7) (light blue) and IAPP(30–37) (dark blue). Only IAPP-GI and IAPP(1–28)-GI inhibited Aβ cytotoxic self-assembly and amyloidogenesis whereas all other segments even the ones containing hot-spot regions, such as IAPP(8–28)-GI, were unable to inhibit uncovering thus important molecular determinants of the IAPP-GI(IAPP) mediated inhibition of Aβ self-assembly. For more details, see the paper by A. Kapurniotu et al. on p. 1313 ff.


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C5-DNA Methyltransferase Inhibitors: From Screening to Effects on Zebrafish Embryo Development

Written by Alexandre Ceccaldi on June 14, 2011 – 5:00 am -

Abstract

DNA methylation is involved in the regulation of gene expression and plays an important role in normal developmental processes and diseases, such as cancer. DNA methyltransferases are the enzymes responsible for DNA methylation on the position 5 of cytidine in a CpG context. In order to identify and characterize novel inhibitors of these enzymes, we developed a fluorescence-based throughput screening by using a short DNA duplex immobilized on 96-well plates. We have screened 114 flavones and flavanones for the inhibition of the murine catalytic Dnmt3a/3L complex and found 36 hits with IC50 values in the lower micromolar and high nanomolar ranges. The assay, together with inhibition tests on two other methyltransferases, structure–activity relationships and docking studies, gave insights on the mechanism of inhibition. Finally, two derivatives effected zebrafish embryo development, and induced a global demethylation of the genome, at doses lower than the control drug, 5-azacytidine.

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Screen shots: A set of flavones and flavanones is described as a new family of nanomolar DNA methyltransferase inhibitors. Structure–activity relationships, enzymatic competition and docking studies (see figure) have provided insights on their mode of action. Two inhibitors effected zebrafish development in a similar fashion to the reference drug, 5-azacytidine.


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Switching Modulation for Protein Labeling with Activatable Fluorescent Probes

Written by Kalyan K. Sadhu on June 14, 2011 – 5:00 am -

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Fluorogenic protein-labeling techniques have been successfully used in live-cell imaging. Fluorescence derived from specific labeling can monitor the localization of proteins. Newly developed chemical techniques have addressed such specific incorporation of probes in the physiological environment. We conclude that some recent promising switching techniques should provide further molecular functional exploitation in vivo.


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